PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss00490.1
Common NameLR48_Vigan08g109000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 342aa    MW: 37780.5 Da    PI: 5.2448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss00490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-18136185356
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Vang0013ss00490.1 136 ISGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 185
                        58*****9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.9E-37135198IPR001471AP2/ERF domain
PROSITE profilePS5103221.641135192IPR001471AP2/ERF domain
PfamPF008477.7E-12136185IPR001471AP2/ERF domain
PRINTSPR003678.5E-9136147IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21137193IPR016177DNA-binding domain
CDDcd000181.04E-31138194No hitNo description
Gene3DG3DSA:3.30.730.103.5E-30138193IPR001471AP2/ERF domain
PRINTSPR003678.5E-9158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
LVVVMASNSG KSGKEGVEET HHHVVFGESE GRDSEKEKGK CVDLSSGRRQ WKPVFDDASI  60
SQRPLKKIRS PEHQSPNQQP SSSSSSMLSL QPPSSRIVFP FAFEGNQHPM PSFPHSFGTT  120
NLPLFRPPLQ PTQQMISGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED AAMAYDREAF  180
KLRGENAKLN FPELFLNKDK AEPSTPAPAS SSNEGSTSTS SQNTKQPEPV PEETNTESED  240
MPPTETLAEE NAETEEGVSQ PQELVWGEWF NTIPAGWGPG SPVWDDLDHN NLLLHSQLPF  300
VNQSHQEFHH DAAGASSQTQ QDNNNAGPGS SSPSCSMRPF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19138192560ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493537.11e-144PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0L9V5K31e-138A0A0L9V5K3_PHAAN; Uncharacterized protein
STRINGGLYMA06G45010.21e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-48ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]